Which Applications to set as Default in the Profile Type

I was asking about Default Applications in a previous resolved question but forgot to ask about applications in the Application Tab within my 'Registered' Profile Type in the Admin Area.

I do not have any applications set as default in the main Applications section, but was trying to work out which applications to set to default within my 'Registered' Profile Type (I know setting to default will not allow them to be unistalled by the user).

Originally I did not have any set to default and the following applications could be manually installed and uninstalled by a user browsing the application area within his profile:

Photo Albums
Articles
Blog
Calender
Comments
Discussions
RSS Feeds
Friends
My Campaigns (JGive)
My Favourites (JReviews)
My Listings (JReviews)
My Reviews (JReviews)
Notes
Photos
Relationship
Tasks
Birthday Alerts
Videos

I can set/not set any or all of the above to default within the Applications tab of my 'Registered' Profile Type if required and that is fine.

However the following Applications are also listed in the Application Tab of my 'Registered' Profile Type:

Apps
Badges
Broadcast (for Superuser only)
Events
Facebook
Files
Followers
Groups
Links
Profiles
Shares
Story
Users
Polls

Do I need to click on each box for this second group (Apps... to Polls) within the Applications Tab of my 'Registered' Member Profile to make them appear/be available for the user or do they appear automatically and/or are used automatically without any input from the user?

If they do appear/are used automatically, do I ignore them and leave their box unchecked in the Application Tab of my 'Registered' Profile Type?