Well I figured out how I can get this to work! Little hacking involved and but I'm running into one problem that I just posted in the vB Migration thread of mine.
However besides the error the way I'm going to do this is add custom module positions in the categories.php file at the bottom of the php.
Modified the main div class and added a pull-left (Line: 28)
<div class="discuss-categories pull-left">
Added for example this at the bottom.
<div class="pull-right">
<div class="discuss_cat_01">
<?php echo DiscussHelper::renderModule( 'discuss-category-001' ); ?>
</div>
<div class="discuss_cat_02">
<?php echo DiscussHelper::renderModule( 'discuss-category-002' ); ?>
</div>
<div class="discuss_cat_03">
<?php echo DiscussHelper::renderModule( 'discuss-category-003' ); ?>
</div>
<div class="discuss_cat_04">
<?php echo DiscussHelper::renderModule( 'discuss-category-004' ); ?>
</div>
</div>
Granted I will have to modified the styling a little bit to line up properly to each category and also skip over the parent categories. But I think this may be the best solution for now.